Author Archives: Anna Fijarczyk

Predicting protein interactions from coevolving residues – 6 Mars 2020

Journal club sur la génomique évolutive et la biologie des systèmes Cong Q, Anishchenko I, Ovchinnikov S, Baker D. 2019. Protein interaction networks revealed by proteome coevolution Science doi: 10.1126/science.aaw6718 Responsable de la discussion :  David Bradley du Landry Lab … Continue reading

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Transcriptional scanning shapes germline mutation rates – 21 Février 2020

Journal club sur la génomique évolutive et la biologie des systèmes Xia B, Yan Y, Baron M, Wagner F, Barkley D, Chiodin M, Kim SY, Keefe DL, Alukal JP, Boeke JD, Yanai I. 2020. Widespread Transcriptional Scanning in the Testis … Continue reading

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Scales of protein evolution constraint – 7 Fevrier 2020

Journal club sur la génomique évolutive et la biologie des systèmes Konaté MM, Plata G, Park J, Usmanova DR, Wang H, Vitkup D. 2019. Molecular function limits divergent protein evolution on planetary timescales eLife doi: https://doi.org/10.7554/eLife.39705.001 Responsable de la discussion … Continue reading

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Tracking microbial populations at high resolution – 24 Janvier 2020

Journal club sur la génomique évolutive et la biologie des systèmes Nguyen Ba AN, Cvijović I, Rojas Echenique JI, Lawrence KR, Rego-Costa A, Liu X, Levy SF, Desai MM. 2019. High-resolution lineage tracking reveals travelling wave of adaptation in laboratory … Continue reading

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Protein nanopore sequencing – 10 Janvier 2020

Journal club sur la génomique évolutive et la biologie des systèmes Ouldali H, Sarthak K, Ensslen T, Piguet F, Manivet P, Pelta J, Behrends JC, Aksimentiev A, Oukhaled A. 2019. Electrical recognition of the twenty proteinogenic amino acids using an … Continue reading

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Interpreting transcription factors to predict expression level – 13 Décembre

Journal club sur la génomique évolutive et la biologie des systèmes Boer CG, Vaishnav ED, Sadeh R et al. 2019. Deciphering eukaryotic gene-regulatory logic with 100 million random promoters Nature Biotechnology doi:10.1038/s41587-019-0315-8 Responsable de la discussion :  Christian Landry Vendredi … Continue reading

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Adaptation in conserved human proteins – 15 Novembre 2019

Journal club sur la génomique évolutive et la biologie des systèmes Castellano D, Uricchio LH, Munch K, Enard D, 2019. Viruses rule over adaptation in conserved human proteins bioRxiv DOI: https://doi.org/10.1101/555060 Responsable de la discussion :  Anna Fijarczyk du Landry … Continue reading

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Selection on human mtDNA – 1 Novembre 2019

Journal club sur la génomique évolutive et la biologie des systèmes Wei W, Tuna S, Keogh MJ, Smith KR, Aitman TJ et al. Chinnery PF, 2019. Germline selection shapes human mitochondrial DNA diversity Science DOI: 10.1126/science.aau6520 Responsable de la discussion … Continue reading

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Genome shaping by transposons in a fungal pathogen – 18 Octobre

Journal club sur la génomique évolutive et la biologie des systèmes Faino L, Seidl MF, Shi-Kunne X, Pauper M, van den Berg GCM, Wittenberg AHJ and Thomma BPHJ, 2016. Transposons passively and actively contribute to evolution of the two-speed genome … Continue reading

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What can we learn from the yeast gene-knockout collection – 4 Octobre 2019

Journal club sur la génomique évolutive et la biologie des systèmes Puddu F, Herzog M, Selivanova A, Wang S, Zhy J et al. Kupiec M, Jackson SP, 2019. Genome architecture and stability in the Saccharomyces cerevisiae knockout collection Nature DOI: … Continue reading

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